Fixed sle_adm3: validTo held the Date -1-11-30 in all 167 rows, where the shapefile inside inst/extdata/sle_adm3.zip holds no date at all. An old GDAL wrote that sentinel for the empty DBF field when the dataset was first built. data-raw/sle_adm3.R rebuilds the dataset from the zip, and validTo is now NA. No other column changed. The other 102 .rda files in data/ hold no date before 1900
appliedepidata 0.0.0.9012
Added sle_hf: the Sierra Leone health facility points from OpenStreetMap (Humanitarian Data Exchange), the third GIS input of the Epidemiologist R Handbook’s GIS basics chapter. The seven shapefile components already shipped inside sle_adm3.zip; they now also ship as inst/extdata/sle_hf.zip, so get_data(name = "sle_hf") returns an sf object and save_data(name = "sle_hf") works on its own
appliedepidata 0.0.0.9011
Fixed gis_covid_incidence: inst/extdata/gis_covid_incidence.csv had become double-CSV-encoded with mangled accented country names during a prior encoding fix; rebuilt the raw file from the correct internal data and made data-raw/gis_covid_incidence.R explicit about UTF-8 so it doesn’t regress under a non-UTF-8 locale
appliedepidata 0.0.0.9010
Updated date columns in feveriosis_recent_es, feveriosis_recent_fr, feveriosis_recent_pt, and feveriosis_recent_ru to ISO 8601 format, and fixed two corrupted birth dates in the French file plus one leftover unconverted sample date each in the Spanish and Portuguese files
appliedepidata 0.0.0.9009
Added Russian-language multidisease surveillance case study datasets: testy_multibolezni and uvedomleniya_multibolezni
appliedepidata 0.0.0.9008
Added epiRhandbook time series datasets: campylobacter_germany, germany_weather, and campylobacter_germany_epirh
Added case_linelists_ bundle of epiRhandbook datasets: case_linelists_linelist_raw, case_linelists_linelist_cleaned_excel, case_linelists_linelist_cleaned_rds, and case_linelists_cleaning_dict
Added example_ iteration/loops example datasets: example_case_linelist_2020_10_08, example_hospital_linelists, example_central_hospital, example_military_hospital, example_port_hospital, example_st_marks_maternity_hospital, example_missing, example_other, example_fluH7N9_China_2013, and example_district_weekly_count_data
Added gis_basics_ mapping example datasets: gis_population_sle_admpop_adm3_2020, gis_linelist_cleaned_with_adm3, gis_covid_incidence, and gis_population_sle_population_statistics_sierraleone_2020
Added gis_africa_countries (Natural Earth Africa boundaries) and linelist_cleaned (Ebola outbreak Sierra Leone, 2014)
Added epidemic_models_ example datasets (epinow2 outputs, Ebola outbreak Sierra Leone, 2014): epidemic_models_epinow_res, epidemic_models_epinow_res_small, epidemic_models_generation_time, epidemic_models_incubation_period, epidemic_models_estimate_samples, epidemic_models_estimated_reported_cases_samples, epidemic_models_latest_date, epidemic_models_reported_cases, epidemic_models_summarised_estimated_reported_cases, epidemic_models_summarised_estimates, and epidemic_models_summary
appliedepidata 0.0.0.9007
Updated feveriosis data after feedback
appliedepidata 0.0.0.9006
Updated feveriosis in feveria data to be in Viraland
appliedepidata 0.0.0.9005
Updated feveria data for case study
appliedepidata 0.0.0.9004
Added feveria data for case study
appliedepidata 0.0.0.9002
Added viraland cholera data for qmd and new intro to r course
appliedepidata 0.0.0.9001
Refactor get_data() so that can assign to an object
Fix redundant parts of unique identifiers in tableoftables.xlsx